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Bioinformatics Computing - Bryan Bergeron

Contents


Chapter 1. The Central Dogma
The Killer Application
Parallel Universes
Watson's Definition
Top-Down Versus Bottom-Up
Information Flow
Convergence
Endnote
Chapter 2. Databases
Definitions
Data Management
Data Life Cycle
Database Technology
Interfaces
Implementation
Endnote

Chapter 3. Networks
Geographical Scope
Communications Models
Transmissions Technology
Protocols
Bandwidth
Topology
Hardware
Contents
Security
Ownership
Implementation
Management
On the Horizon
Endnote
Chapter 4. Search Engines
The Search Process
Search Engine Technology
Searching and Information Theory
Computational Methods
Search Engines and Knowledge Management
On the Horizon
Endnote
Chapter 5. Data Visualization
Sequence Visualization
Structure Visualization
User Interface
Animation Versus Simulation
General-Purpose Technologies
On the Horizon
Endnote
Chapter 6. Statistics
Statistical Concepts
Microarrays
Imperfect Data
Basics
Quantifying Randomness
Data Analysis
Tool Selection
Statistics of Alignment
Clustering and Classification
On the Horizon
Endnote
Chapter 7. Data Mining
Methods
Technology Overview
Infrastructure
Pattern Recognition and Discovery
Machine Learning
Text Mining
Tools
On the Horizon
Endnote
Chapter 8. Pattern Matching
Fundamentals
Dot Matrix Analysis
Substitution Matrices
Dynamic Programming
Word Methods
Bayesian Methods
Multiple Sequence Alignment
Tools
On the Horizon
Endnote
Chapter 9. Modeling and Simulation
Drug Discovery
Fundamentals
Protein Structure
Systems Biology
Tools
On the Horizon
Endnote
Chapter 10. Collaboration
Collaboration and Communications
Standards
Issues
On the Horizon
Endnote
Bibliography

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